HsaALTA1010399-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000100393 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr22:41158412-41160722:+
Coord C1 exon
chr22:41158412-41158500
Coord A exon
chr22:41160612-41160641
Coord C2 exon
chr22:41160642-41160722
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTGTTGTGTGAACGGAACAGTTC
3' ss Score
1.94
Exon sequences
Seq C1 exon
TTGGAGTTCTCTCCACAGACACTGTGTTGCTACGGCAAACAGTTGTGCACAATACCTCGTGATGCCACTTATTACAGTTACCAGAACAG
Seq A exon
TTCACCCCAGTATGGCCTTCTTGCCGACAG
Seq C2 exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAGATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAGCCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100393-58-58,58-57-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAAACAGTTGTGCACAAT
R:
GTCATCCCCCAAAGAAACGCT
Band lengths:
121-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains