BtaALTA0010665-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112848294-112850269:+
Coord C1 exon
chr5:112848294-112848382
Coord A exon
chr5:112850159-112850188
Coord C2 exon
chr5:112850189-112850269
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTGTTGTGTGAACGGAACAGTTC
3' ss Score
1.94
Exon sequences
Seq C1 exon
TTGGAGTTCTCTCCACAGACACTCTGTTGCTATGGCAAACAGTTATGCACAATCCCTCGTGATGCCACTTACTACAGTTATCAGAACAG
Seq A exon
TTCACCCCAGTATGGCCTTCTTGCCGACAG
Seq C2 exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAAATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAACCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-27-27,27-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCGTGATGCCACTTACT
R:
TGAGGTTGGGAAGGGTCATCC
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development