BtaINT0056592 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112848294-112850269:+
Coord C1 exon
chr5:112848294-112848382
Coord A exon
chr5:112848383-112850188
Coord C2 exon
chr5:112850189-112850269
Length
1806 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TATGGCCTTCTTGCCGACAGGTA
3' ss Score
10.14
Exon sequences
Seq C1 exon
TTGGAGTTCTCTCCACAGACACTCTGTTGCTATGGCAAACAGTTATGCACAATCCCTCGTGATGCCACTTACTACAGTTATCAGAACAG
Seq A exon
GTAAGCTTGACCTGTGTGGACCAAGGTCACAGTGTCCGCGTGTCCAGGGAGTGCATGCGGATGGACCAGCACACATACAGTCATGGTTTGTGTGTGGCTTGCTTGAACACAGCTGTACAGCACAAGTTCTGGTCTTTGCATTCTGCCGTTGCAAAATTGCATGATTTTCTAGTAGAAAGGAGCCTTGGGTCAGTTGTCTGGGCCCGTATTTTTATAAGCCAGGAACCCAAGGCATGAAGAAGTCAAGCAACTTTATGAGTTGGTAGCATTCATGGGATTATGTCCCAGGCTCCACATTCTTTTCCCACTGTCTTTTTATAGCTTACCACAGCCTCTGGCAAAACAGAAAATTGTCAAACTAATTGGTCTATCTCTCCGTGAAATTCCCAAATCTACCCAGAAAACTTTTAACCAGAAATTTGTTAGCCAGCTGTATCTTTTAGGAAATAATTCCCTTTTTGTGTGCAATGGATTCCTCAGTTTTTCTTGGAGCATATAAAATCAGAGGATCCCAGGGTACTTGCTTTTTTCTCTGTTAAGTACATCAAAAGGAGCACCTCCAAAAACAGCTCGGTACCGGCCTGTTCCTTACAAGATGCACATGACCGTGGATGGTGTGCTTTTAACAAGTTAGACACTTCGGCCTTTTCTCCTGCTAAAGTAAGGACTGTAGTCACACAGACTGCATTCATTAATCATGATTTGTCTCTTATTTTGTGAAATCAGTCAGCAGTGTACCTGGCATGGGGTGTTGACTTGGGGCTCTAAGACAGTGTAAGAGCATGGCTGGACAGTCAGTACTTTGATAAAGCAGCCCCATGGTGATGGCTTTTTGCTGAACTTGTGCACTACAGCTGTATTTCTAGCTTTGAAAAAGTCACTTAAACTTTTTGTTTTATTTACAAAAAGTTAGGTGTGTTCTCCTAATGCTTTGTAGTGGTAAGAATCCACAGTTTTTTATTCATGAAAACCTAGGAAAAAATGGGTCTCAAGTTGTTATTAGCACCTTACATTCAAAAAAAGCAAGTGACAGCTGGCATGCTATAGTCTCATGCTATCATCTTGGCGTTTATATACCATTTTTGGATTTTAAACACCAGTCTACAGCGCTTGCAGTCTTTGTACCAAGGAATATGTAATCACGTGTCTGCACATACCACTGCCTTTCATTTCCCTCTCAAACTAGGTGGCTACAATCAGTATTTAACTGCTTGTGCAGACTTTTTATTGTACACTGTGGTTTCCTTGGGATCAAAGAGAAATTGGTGTTTTTTGTTTTTTTCAGACCAAAATTGTTTTTAGATGATTATTTCCTAGTACTGTGTTCATAGTGGATTTTTGTTTATCCTATCTTTGATTATTTGTATCAAGTAGCATTAATTACTCAAATGAAAGGGTATAGGTCTGTGTGAGGCTTGTTTATTTGCTGTAATCATTTGCTACTTGTGATCCCATTGAGATATTTAATGCTAATCTGTGCTTTGCCTTGGCTTTCTGCTTTGTGTTGTCTTGTCTTGCTTTTATGTTTTTTGTTGCCCTGCAATCCCTCATTTCTTCGTTTGTTTTGTGTTTTTTTTTTTCTCCTCATGCTTGTCGTTGTCTGCACTTGGCTTTGATTGCAAAAACCAAAACCCAAACTGTGGTGCCCATAAATCTGCATCATTGAATGTTCTTGTCGCCGTTGATGACCTGCTCTCTGCTCCCGTCCCCCTCCTTGGCCTGCTGTGATTGGTGGCTTCGTTGCTTGGCTTGGGCTGTGTTGTGTGAACGGAACAGTTCACCCCAGTATGGCCTTCTTGCCGACAG
Seq C2 exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAAATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAACCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198:ENSBTAT00000021556:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]