GgaINT0114278 @ galGal3
Intron Retention
Gene
ENSGALG00000011992 | EP300
Description
NA
Coordinates
chr1:51681749-51684184:-
Coord C1 exon
chr1:51684096-51684184
Coord A exon
chr1:51681830-51684095
Coord C2 exon
chr1:51681749-51681829
Length
2266 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
Exon sequences
Seq C1 exon
TTGGAGTTCTCGCCACAGACTTTGTGTTGCTATGGCAAACAGCTATGCACAATCCCTCGAGATGCCACTTACTACAGTTACCAGAACAG
Seq A exon
GTAAGGAAAACTCGCTTGGTGCAGTTTTGTGCATGACGCAATTGATCTGTGAAAGGCATGCATGTATACACGTATATACCCTCTTCATATGTGTACACCTTTGTATTATACAAAAAAATTTGCTGAAAGTGCCCTTGAATAGTTTCCTTTGTGTGCAAACAATTTCTTTGCAAAAGTTCACTGCAGTCTTCGCTCTTCCTTTTTTGCTTGCAGGAATGTCTGATGTTCTACTAAATTTTTATGCTATTGTTAACCAAATATTTAGTAGTCTAGATGTCATACACAAGTCTGTTAACTTGCTTGCTACCATGTAGCAGTATTGTTCATGAAAAAAATAGAGCAAGTGTGTTATGCTCATAAATACGTCACACTTAACAAGCTTTTGGTTTTTCTTAAGATATTAACTGAAGAACAAACTTCTGTGGTGCAAATCTTCATTGAAGATTTATATATTGATATATTGAATAGTTTGATATATTTTGGTCCCCTGGTCACCTTAAAGGAGCAGTCTTCAGAGGCTTTATTAAAGAATTTAAGTCGTCTTTGACTTCTGAAGGCATCTCTTCGCTGACTGGAAGAGTGAGGCACGAAGAAGAAAAATACATGTTTTAAAGCTCTCGTGTCCCTGTGCCTATTGCCAGAATGTACCAGTTAGACCTGAGGGCTGATTACCTCAAAATTATGTCACCTCCATCAGTTTAGTTCCTGCTCTGTTCATTCACCTTCCAAAACAACCAACCAAAAGTAATCACAAAGACTTGAATGCCAAGAAGATTTGACACCCGTTTTAATTTTTTTAAGCACCTGGTTAAGCAAAGGCATCCAAAGAGCTGTAACAGTTGCATCTTAGCCTTCTTAGGCATAATGAAGGTTTGTAGCAGGGAATGGAGGTTTCTGGTAGCAAGGAAGTGGAAAATAAGTTTCCAGAATCTGTAGTTACAGAATTGCATAGTAACTGTAATTCTAGATTTAAGATACAAAGCACTCTACCTTATAGCACTTGATGGACCAAAAGACTAATATCGCAAAATCTGACATCCTTTAATGTTTTAAAACTTTAGAATGGAATGTTTGCACTGTAAGACATGCACATGTGATTTTCAAATTGTTATATACACACATGCATGTACATCCATATACTCACGTACTCCCAGAAGTACTCTTGTATGCATTACCTCAGGTGGACTGGGAGAGAAGGTTTAGACCTCTTGACTTAGCTTAACAGCTGTTTTAATGTTGCTTTGTGGCTTTACAGTAAACTGTTGCAACTTTTTTTCCTTTTATTTTTAGATGCCTTGTGCATTCAATTAACATACTTCAGTAGTAGAGAGAGGCCACAGTTTCTCAAAACACTTGAGGGCTGGGGTAGAATCTTGAATCAACCAATTTTTTTTTTCAAATGTAGATGAAATCTTTTTCTGTGATGCTTATTGTACTGGTACTTGGACTGTTCTGGGCTGTGGAAGAATTTTATCAGTGCAGAGCACTTTGTATGCAGCTAGCACTGGGTATTTTGTTAATGTGCAATTTGACAGTTTGATAACGAGTGTCTGAAAGATTTTGAGGACTGATTTTATTAAAAACTTCTGATATTTAACTTCCCCTTCCCAGTGAGAGAAAATCCTGCAGCCTTTCAGAATTTATACATTAAGATGGAAGACTGCCCTTCTTCCATTGATGCTCTGCAGATCTTCCTGCCAACAGAACTGCTATGCTGATACACAGATCAGAGCAGCAGTTCTTCCTTCTTTCTGTTCTTTCCACTTTCTCATTTTAATTCTTTGCTGTACATGGCATGGATTATTGAAATAAAGAGGGTGTGGGTATGCTAAAAAGAAAAACTCATTTAATTTGCTTTCATCATTTGCTGCTTGAGAACCCATTTGAGAGATATAATGCTAATGTGTGCTTTGCCTTGGCTTTCTGCTTTGTGTTGTCTTGTCATGCTTCTCTGTTTTTGTTTTTGTCCTGCAACCCCACATTTCTTTGTTCATGTGCGTATTTTTCTCCTTCATGCTTGTCATTGTCTGCATTTGGCTTTGATTGCACACAAAAAAACCCACACAAACAAAACAAACAAAAACCAACCAAACTTAATGTGGGGCCTATAAATCTGCATCCTTTTGAATATCCTTGTCGCCGTTGATGACCTGCTCTCTGCTCCTGTCCTTTCCTTGGCCTACTGTGGTTGGTGGCTCCATTGCTTGGCTTGGGCTGTGTTGTGTGGATGGAGCAGTTCACCCAAATATGGCCTTCTTGCTGACAG
Seq C2 exon
GTATCATTTCTGTGAGAAGTGCTTCAATGAAATCCAAGGGGAGAGCGTTTCTCTGGGAGATGACCCTTCACAACCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992:ENSGALT00000019563:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]