MmuINT0057768 @ mm10
Intron Retention
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81632424-81634084:+
Coord C1 exon
chr15:81632424-81632512
Coord A exon
chr15:81632513-81634003
Coord C2 exon
chr15:81634004-81634084
Length
1491 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TATGGCCTTCTTGCCGACAGGTA
3' ss Score
10.14
Exon sequences
Seq C1 exon
TTGGAGTTTTCTCCACAGACTCTTTGTTGCTATGGGAAACAGTTATGCACAATCCCCCGTGATGCTACTTACTACAGTTACCAGAACAG
Seq A exon
GTAAGCTTAACCATATGTGGACCATGGTCCATGTGTCCTTGTATATAGACCTACGTGCAATCCAGATCTCGAGTGTGGGGACACACGCACACACATTGTGGTTTGTTACCTGCTTTAAAACATATGTATTACATACATTCCTTTCTATAGTATTTTCTAGTTTAAAAAAAAAGTTGCAAGTTTTGTGAACCTTATCTCACCCTAATTCTTGGATTATGACTAAAAAGCTCTGGAGAGTGTTTACTTTGTGTCAGGCAAATTAGAAACAAAGTAATCTCCCAGAGCTGATGTCTAGCTAATTTGTAGAGCACTTGCCTGGCATCCATGAAGCCCTGGGTTTGAGCTTAGCACCTTGTATACGGATTATAGTGGTTCAAAGCTATAATTCAAGTCCTGGAAGGGTAGAGGAGGTTCCGGGATCACTTCAAAGTTGTACTTGACTGGCTATATAAGTAAATTTGAGGCCAGCCTAGATGGCATAAGACCCTGTCTAAAAAAAAGAAAATGTGAAAAAATATATATACACACATTGTTTTAACTATGTAAACATGAGTATCCAATGTTCTCTGCCTTAGTCTTCACTTACCCAGTAGCTGTATACACTAATCACTTGATCGTGTATAATTAATCTCTTATTGGTAGTAATCATACTTCATTAGAGATCATCTAGTGTTTGTTCTTGGATCTCTGCAACAGACCTGCATATCTAAGCAGTGATTGCCCTGACCTGTTTAACGCTGCCAACACTGGCTCAGAGGTTAAGAGTACTGGCTGCTCTTCCAAAGGACCTAGGTTCAATTCTCAGCAACCTCATGGCGGCTCACAACCATTTGTAATGCAATCATTTCACTCTTCTGGTTTGCATGAGAACAGAACATTCACATGCGTTAAATAAATAAATCTTGCATGGTGGTGGCAGTGCACACCATATATATACATACATACACACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGTGCGTGTTGGCAGCAGCACTGTGTAGTGAAAATCAAGCAGTATGGTTCTAAGTGAAAGGTCTTTTTTATTTGGTGTAATCATTTGCTACCTGTGATCCCATTGAAATATTTAATGCTAATATGTGCTTTGCCTTGGCTTTCTGCTTTGTGTTGTCTTGTCTTGCTTTTGTTTTTTGTTGTCTTGCAATCCCTCATTTCTTCGTTTGTTTTGTTTTTTTTTCCTCCCCCATGCTTGTCGTTGTCTGCGCTTGGCTTTGATTGCAAAAACAAACAAAAAAACAAAAAACAAAACAATCAAAAAAAACAAAACAAACCCAAACTGTGGGGCCCATAAATCTGCATCATTGAATGTCCTTGTCGCCGTTGATGACCTGCTCTCTGCTCCCGTTCCCCTCCTTGGCCTGCTGTGATTGGTGGCTTCGTTGCTTGGCTTGGGCTGTGTTGTGTGAACGGAACAGTTCACCCCAGTATGGCCTTCTTGCCGACAG
Seq C2 exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAAATCCAAGGGGAGAGCGTTTCTTTGGGTGATGACCCTTCCCAACCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024:ENSMUST00000068387:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types