MmuALTA0006432-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81462854-81464514:+
Coord C1 exon
chr15:81462854-81462942
Coord A exon
chr15:81464404-81464433
Coord C2 exon
chr15:81464434-81464514
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTGTTGTGTGAACGGAACAGTTC
3' ss Score
1.94
Exon sequences
Seq C1 exon
TTGGAGTTTTCTCCACAGACTCTTTGTTGCTATGGGAAACAGTTATGCACAATCCCCCGTGATGCTACTTACTACAGTTACCAGAACAG
Seq A exon
TTCACCCCAGTATGGCCTTCTTGCCGACAG
Seq C2 exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAAATCCAAGGGGAGAGCGTTTCTTTGGGTGATGACCCTTCCCAACCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-23-25,23-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATCCCCCGTGATGCTAC
R:
TGAGGTTGGGAAGGGTCATCA
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: