DreALTA0010970-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18815473-18817745:-
Coord C1 exon
chr12:18817657-18817745
Coord A exon
chr12:18815535-18815583
Coord C2 exon
chr12:18815473-18815534
Length
49 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATGTTGGCACATGGTGTAGTTC
3' ss Score
0.44
Exon sequences
Seq C1 exon
CTTGAATTTTCTCCCCAAACTCTGTGCTGCTATGGGAAACAGTTATGCACTATACCACGAGATGCTGCTTACTTTAGTTATCAGAACAG
Seq A exon
TTCACCAAAATATGGGCTTCTTGCTGACAGGTACCACTTCTGCGAGAAG
Seq C2 exon
TGTTTCAATGAGATCCAGGGTGAAACCGTGTCCTTGGGAGACGATCCATCCCAACCTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666-24-27,24-26,24-25-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAAACTCTGTGCTGCTA
R:
TTGGGATGGATCGTCTCCCAA
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]