HsaALTA1014231-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000107147 | KCNT1
Description
potassium sodium-activated channel subfamily T member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr9:135757298-135758508:+
Coord C1 exon
chr9:135757298-135757381
Coord A exon
NA
Coord C2 exon
chr9:135758414-135758508
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
3' ss Seq
AGCCACCACTCCTTCCACAGAAT
3' ss Score
7.01
Exon sequences
Seq C1 exon
ATCTTCTGGCCGCCGCTGCGGAACCTGTTCATCCCCGTCTTTCTGAACTGCTGGCTGGCCAAGCACGCGCTGGAAAACATGATT
Seq A exon
NA
Seq C2 exon
AATGACTTCCACCGTGCCATCCTGCGGACACAGTCAGCCATGTTCAACCAGGTCCTCATCCTCTTCTGCACCCTGCTGTGCCTCGTTTTCACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147-21-30,21-29-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0788511=Ion_trans_2=PU(12.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTTCTGAACTGCTGGCT
R:
ACCTGGTTGAACATGGCTGAC
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains