HsaALTA1015528-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000109971 | HSPA8
Description
heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
Coordinates
chr11:123061120-123062136:-
Coord C1 exon
chr11:123062064-123062136
Coord A exon
NA
Coord C2 exon
chr11:123061120-123061258
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTTGTGTGGGTGTTTTCCAGCAC
3' ss Score
7.66
Exon sequences
Seq C1 exon
CTCATTGAACTCGCCTGCAGCTCTTGGGTTTTTTGTGGCTTCCTTCGTTATTGGAGCCAGGCCTACACCCCAG
Seq A exon
NA
Seq C2 exon
CACGGAAAAGTCGAGATAATTGCCAATGATCAGGGAAACCGAACCACTCCAAGCTATGTCGCCTTTACGGACACTGAACGGTTGATCGGTGATGCCGCAAAGAATCAAGTTGCAATGAACCCCACCAACACAGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109971-3-15,3-14,3-13-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.066
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(2.6=88.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTTATTGGAGCCAGGCC
R:
AAACTGTGTTGGTGGGGTTCA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains