MmuALTA1004485-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015656 | Hspa8
Description
heat shock protein 8 [Source:MGI Symbol;Acc:MGI:105384]
Coordinates
chr9:40801461-40802127:+
Coord C1 exon
chr9:40801461-40801620
Coord A exon
NA
Coord C2 exon
chr9:40801989-40802127
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
CCTGTGTGGGTGTCTTCCAGCAT
3' ss Score
7.92
Exon sequences
Seq C1 exon
AGCAGATCCGGAGGATGGGCTGAGTCAGGGCGGCGCCGCCATGGCCTTGTGGCTCCGCGTGGCGGGGGAGGGGAGCCACAGGCGCCCTGGTCTTTTTATCCTGTCTGTGACTTCAAATATAAGGCTTCTGCCCGGCGCCCACAGGGCAGGGCCCCCCGAG
Seq A exon
NA
Seq C2 exon
CATGGAAAGGTGGAAATTATTGCCAATGACCAGGGTAACCGCACCACGCCAAGCTATGTTGCTTTCACGGACACAGAGAGATTAATTGGGGATGCGGCCAAGAATCAGGTTGCAATGAACCCCACCAACACAGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015656-4-2,4-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.072
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(10.4=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCCTGGTCTTTTTATCCT
R:
TGGCCGCATCCCCAATTAATC
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types