MmuALTD0006816-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015656 | Hspa8
Description
heat shock protein 8 [Source:MGI Symbol;Acc:MGI:105384]
Coordinates
chr9:40801213-40802127:+
Coord C1 exon
chr9:40801213-40801313
Coord A exon
chr9:40801314-40801353
Coord C2 exon
chr9:40801989-40802127
Length
40 bp
Sequences
Splice sites
5' ss Seq
GAGGCATGG
5' ss Score
1.22
3' ss Seq
CCTGTGTGGGTGTCTTCCAGCAT
3' ss Score
7.92
Exon sequences
Seq C1 exon
CGGCACCCTTCTGGAAGGTTCTAAGACAGGGTATAAGAGAGAGGGAAGCGGGCGGAAACCGGTCTCATTGAACGCGGAGGCAGCTGCCTGGCATTTGTGTG
Seq A exon
GTCTCGTCGTCAGCGCAGCTGGGCCTACACACAAGGTGAG
Seq C2 exon
CATGGAAAGGTGGAAATTATTGCCAATGACCAGGGTAACCGCACCACGCCAAGCTATGTTGCTTTCACGGACACAGAGAGATTAATTGGGGATGCGGCCAAGAATCAGGTTGCAATGAACCCCACCAACACAGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015656-0-2,1-2,2-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.072
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(10.4=91.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGAGAGAGGGAAGCGGGC
R:
TCTGTGTCCGTGAAAGCAACA
Band lengths:
146-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types