MmuALTD1003753-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015656 | Hspa8
Description
heat shock protein 8 [Source:MGI Symbol;Acc:MGI:105384]
Coordinates
chr9:40801461-40805200:+
Coord C1 exon
chr9:40801461-40801620
Coord A exon
chr9:40801621-40801763
Coord C2 exon
chr9:40804932-40805200
Length
143 bp
Sequences
Splice sites
5' ss Seq
CAGGCTTGG
5' ss Score
-2.12
3' ss Seq
TTTGATTTCTTTTTTCTCAGACT
3' ss Score
8.02
Exon sequences
Seq C1 exon
AGCAGATCCGGAGGATGGGCTGAGTCAGGGCGGCGCCGCCATGGCCTTGTGGCTCCGCGTGGCGGGGGAGGGGAGCCACAGGCGCCCTGGTCTTTTTATCCTGTCTGTGACTTCAAATATAAGGCTTCTGCCCGGCGCCCACAGGGCAGGGCCCCCCGAG
Seq A exon
GTGGGAAAGGGGGATCCTGGCTCCCGCGGTGCGCGGTCCGGGTGGGGGGGGTTCGGGGGGCGCTCGGAGGTGGCCACGTGCTCCACCATTGTCGCAGACCTTTAGGACAGATGGTTCCTTGAGCCTTGGGCGGGCTGTGCCAG
Seq C2 exon
ACTGCAGAGAAGGAAGAATTTGAGCATCAGCAGAAAGAACTGGAGAAAGTCTGCAACCCTATCATTACCAAGCTGTACCAGAGTGCAGGTGGCATGCCTGGGGGAATGCCTGGTGGCTTCCCAGGTGGAGGAGCTCCCCCATCTGGTGGTGCTTCTTCAGGCCCCACCATTGAAGAGGTGGATTAAGTCAGTCCAAGAAGGTGTAGCTTTGTTCCACAGGGACCCAAAACAAGTAACATGGAATAATAAAACTATTTAAATTGGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015656-4-20,5-20,6-20-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.803
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PD(4.3=41.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCCTGGTCTTTTTATCCT
R:
CAATGGTGGGGCCTGAAGAAG
Band lengths:
251-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types