HsaALTA1019913-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121142091-121144082:+
Coord C1 exon
chr9:121142091-121142270
Coord A exon
chr9:121143903-121143905
Coord C2 exon
chr9:121143906-121144082
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TAATATTTCTTTTATTTTAGAAG
3' ss Score
7.24
Exon sequences
Seq C1 exon
ATGAATTTTGATAAGAGGCAACATGAAGCAAGAATCCAGCAAATGGAGAATGAAATTCACTATTTGCAAGAAAATCTAAAAAGTATGGAGGAAATCCAAGGCCTTACAGATCTCCAACTTCAGGAAGCTGATGAAGAGAAGGAGAGAATTCTGGCCCAACTCCGAGAGTTAGAGAAAAAG
Seq A exon
AAG
Seq C2 exon
AAACTTGAAGATGCCAAATCTCAGGAGCAAGTTTTTGGTTTAGATAAAGAACTGAAGAAACTAAAGAAAGCCGTGGCCACCTCTGATAAGCTAGCCACAGCTGAGCTCACCATTGCCAAAGACCAGCTGAAGTCCCTTCATGGAACTGTTATGAAAATTAACCAGGAGCGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-39-46,39-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAACTTCAGGAAGCTGA
R:
ACTTGCTCCTGAGATTTGGCA
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains