RnoALTA0009636-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14337585-14339932:+
Coord C1 exon
chr3:14337585-14337764
Coord A exon
chr3:14339753-14339755
Coord C2 exon
chr3:14339756-14339932
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTATGGTTCTTTTATTTTAGAAG
3' ss Score
7.71
Exon sequences
Seq C1 exon
ATTAAGTTTGATAAAAGACAACATAATGCAAGAATCCAGCAATTAGAAAACGAAATTCACTATTTGCAAGAGAACCTAAAAAGTATGGAAAAAATCCAAGGCCTTACAGACCTCCAGCTTCAGGAAGCAGATGAAGAGAAGGAAAGAATTCTGGCCCAACTCCAGGAGTTAGAGAAAAAG
Seq A exon
AAG
Seq C2 exon
AGGCGGGAAGATGCCAGGTCTCAGGAGCAGTTCCTTGGTTTAGATACAGAGCTGAAAAGTCTGAAGAAGGCTGTGGCTGCTTCTGATAAACTAGCTGCAGCCGAGCTCACCATTGCCAAAGAGCAGCTCAAGTCCCTGCACGGAACTGTCATGAGGATTAATCAGGAGCGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-29-37,29-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACCTCCAGCTTCAGGAA
R:
TCCTGAGACCTGGCATCTTCC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]