HsaALTA1020849-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000121903 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr1:33491025-33493615:+
Coord C1 exon
chr1:33491025-33491702
Coord A exon
NA
Coord C2 exon
chr1:33493190-33493615
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CTCTTCACTCCTGACAGCAGGTG
3' ss Score
4.13
Exon sequences
Seq C1 exon
TGTGGAGGACATGAAGGTGTCAGGTGTTCACTGGGGCTATGAGGAGACCAAGACTTTCCTGGCAATTTTGAGTGAATCTCCTTTCTCTGAAAAGCTCCGGACTTGTCACCAGAACCGCCAGGTATATCGGGCCATTGCAGAGCAGCTAAGGGCAAGGGGCTTCCTGCGGACACTGGAGCAATGTCGCTATAGGGTCAAAAACCTCCTACGGAATTACCGGAAAGCCAAGAGCAGCCACCCACCAGGTACCTGCCCCTTCTATGAGGAGCTGGAGGCCCTGGTCAGGGCTCGGACAGCCATCAGAGCCACAGATGGCCCAGGAGAGGCCGTGGCACTTCCCAGGCTCGGGTATAGTGACGCAGAGATGGATGAGCAGGAGGAAGGGGGCTGGGATCCTGAAGAAATGGCAGAAGACTGTAACGGTGCTGGCCTGGTCAATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTATTG
Seq A exon
NA
Seq C2 exon
GTGTGCACTGGGGCTATGAGGAGACCAAGGCCTTCCTGGCAATTCTCAGTGAGTCCCCATTCTCGGAAAAGCTTCGTACCTGTCACCAGAACAGCCAGGTGTACCGGGCCATTGCAGAGCGGCTGTGTGCTCTGGGCTTCCTGCGGACACTGGAGCAGTGTCGCTACAGATTCAAAAACCTCCTTCGAAGCTACCGGAAAGCCAAGAGCAGCCACCCACCAGGGACATGCCCTTTCTATGAGGAACTGGACTCGCTGATGAGGGCTCGGGCTGCAGTCAGGGCCATGGGGACTGTCCGAGAGGCTGCAGGTCTCCCTAGGTGTGGGCAGAGTAGTGCTGAGACTGATGCCCAGGAGGCCTGGGGTGAAGTGGCCAATGAAGATGCTGTCAAACCTTCAACCTTGTGTCCTAAAGCCCCAGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121903-17-9,17-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=37.9)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=59.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTGGTCAATGTTGAGT
R:
TTGGTCTCCTCATAGCCCCAG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains