HsaALTA1021504-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165890838-165898767:-
Coord C1 exon
chr2:165898686-165898767
Coord A exon
chr2:165890946-165890988
Coord C2 exon
chr2:165890838-165890945
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GAAGTATTATTTGTTTCTAGATA
3' ss Score
5.85
Exon sequences
Seq C1 exon
ATGATGGCTGATCTCATGTTCAGAAAACAAGACTATGAACAAGCAGTGTTTCATTTACAGCAGCTTTTAGAACGTAAGCCAG
Seq A exon
ATAATTATATGACATTATCTCGTTTGATTGATCTCCTAAGAAG
Seq C2 exon
ATGTGGAAAACTCGAGGATGTCCCAAGATTTTTCTCAATGGCTGAGAAACGTAACTCCAGAGCAAAATTGGAACCAGGATTTCAGTATTGTAAAGGACTGTATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-41-42,41-41,41-40-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(5.9=14.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGCTGATCTCATGTTCAGA
R:
TGGAGTTACGTTTCTCAGCCA
Band lengths:
140-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains