RnoALTA0042647-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52302533-52308695:-
Coord C1 exon
chr3:52308614-52308695
Coord A exon
chr3:52302641-52302683
Coord C2 exon
chr3:52302533-52302640
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GAAGTGTTGCTTATTTCTAGATA
3' ss Score
5.98
Exon sequences
Seq C1 exon
CTGATGGCCGACCTCATGTTCAGAAAACAGGACTATGAGCAAGCAGTGTTCCACTTGCAGCAGCTTTTAGAACGAAAACCAG
Seq A exon
ATAATTTTATGACTTTGTCCCGTTTGATTGATCTCCTGAGAAG
Seq C2 exon
ATGTGGGAAACTTGAGGAGGTTCCGAGATTTTTCTTGATGGCTGAGAAACACAACTCCAGAACAAAATTGGAGCCAGGATTTCAGTACTGTAAAGGATTACATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-50-46,50-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(5.9=14.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCGACCTCATGTTCAG
R:
TGGAGTTGTGTTTCTCAGCCA
Band lengths:
139-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]