MmuALTA1026779-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66201473-66207533:-
Coord C1 exon
chr2:66207452-66207533
Coord A exon
chr2:66201581-66201623
Coord C2 exon
chr2:66201473-66201580
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GAAGTATTGCTTCTTTCTAGATA
3' ss Score
6.56
Exon sequences
Seq C1 exon
TTGATGGCCGACCTCATGTTCAGAAAGCAAGACTATGAACAAGCAGTGTATCATCTGCAGCAGCTTTTAGACCGGAAACCAG
Seq A exon
ATAATTTTATGACTTTGTCCCGTTTGATTGATCTCCTGAGAAG
Seq C2 exon
ATGTGGGAAACTTGAGGATGTTCCGAGATTTTTCTTGATGGCTGAGAAACACAACTCCAGAACAAAATTGGAGCCAGGATTTCAGTACTGTAAAGGATTACATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-38-38,38-37,38-36-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(5.9=14.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCGACCTCATGTTCAG
R:
TGGAGTTGTGTTTCTCAGCCA
Band lengths:
139-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types