HsaALTA1022799-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9158420-9160025:-
Coord C1 exon
chr12:9159938-9160025
Coord A exon
chr12:9158577-9159060
Coord C2 exon
chr12:9158420-9158576
Length
484 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TTCTCTCTCTCTCTTTGTAGTTT
3' ss Score
11.62
Exon sequences
Seq C1 exon
GTTACCAGAGACAGCTGAACTACAAACACCAAGATGGCTCCTACAGCACCTTTGGGGAACGATATGGCAGGAACCAGGGCAACACTTG
Seq A exon
TTTTACCACACAGGCAAACACAGGGGAAAAAAGTGGAAGGGCAGGATGATGGAGGGAAATATTTACTGAAGCAGAACATTAGAAGTTAGCTGATTAGAGTTAAAACTACAGAAAGTAAGCTAAGAAATCTAGGAAAGGAAATAAATTCATAGAGCCCACAGTGTAAAAGCAAATGACTTAGTTAACCAACCAAGAAAACTGGAAGGAACCTGAACCTCTGAAGTGGCATAGAAATGCTTTAGGAAGCAAGGACAAGCTGGTAATGAATTGAACAACATGTGGCAGCAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAAGAAAAAGAGATGTCTAAGCTAAAAAGAAAAAGTCTCCAAACTCTCAGTAACAGCTGATTGACTTTCTTGGGTGCACACTGTGATGGGGGAGCCTGTGTGTACAAAACAGAGCAGTAAAGTGCTCAATGAAAAGAGCCTCAGCACTGCATTTTTCCTCCCCCTAG
Seq C2 exon
GCTCACAGCTTTTGTACTGAAGACTTTCGCCCAGGCTCGATCCTACATCTTCATTGATGAAGCACACATTACCCAATCTCTCACGTGGCTCTCCCAGATGCAGAAGGACAATGGCTGTTTCAGGAGCTCTGGGTCACTGCTCAACAATGCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-38-34,38-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCAGAGACAGCTGAACT
R:
GCATTGTTGAGCAGTGACCCA
Band lengths:
238-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains