HsaINT0135677 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9158420-9160025:-
Coord C1 exon
chr12:9159938-9160025
Coord A exon
chr12:9158577-9159937
Coord C2 exon
chr12:9158420-9158576
Length
1361 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TGCATTTTTCCTCCCCCTAGGCT
3' ss Score
11.74
Exon sequences
Seq C1 exon
GTTACCAGAGACAGCTGAACTACAAACACCAAGATGGCTCCTACAGCACCTTTGGGGAACGATATGGCAGGAACCAGGGCAACACTTG
Seq A exon
GTAAGAAAGAAAATCTATTCTGAGTTTCAACTATGAGTTCAGAACGTGCACATAGATTACCTGTCTTAGTCCATTTTCTGTTGCTTATAACAGAATACCTGAAACTAGGTAATTTATAAAGAAAAGAAATTTATTTCTTATAGCTATGAAGGCTGATAAGTCAAAAGTCTAGGGGCCGCATCTAGTTGAGAGTCTTCTTGCTGGTGTGGACTCTGAGGAGTCCCACGGTGATGCAGGGCATCATATGACTAGAGGATTGAATGGGCTCACTTGGGTCTCTCCTTCTCTTCTTTTCTTTTCTTTGTTTTACTTTGTAGAGACTGGGCTAGCATCTCCTCCTCTTCTTATGAAGCCACCAGTCCAACTGTCATGATAGCCCTTTAATCTAGGAATAGATTCATCCATTCATGAGAGCAGAACCCTCATGAGCCAATCACCTCTTAAAGGCTCCACCTCTCAATACTACCACATTGGGGATTAAGTTTTAACATGAGTTTTGGTGGAGAAACAATTTCTAAACCATAATGTTACCTTATTTAATTCTTATAGCTACCCTGGGAAGTGAGAGTTATTAGCTTCATTTTACAGAGGAGAAAACATATTCAGTGTGGATAAATAAATGTGTCAGGAGCAAACATCTAATAAGTGGCAAAATTGAGAACACTTTTAGGTTGATTTTTTTAATCCAATATACCCAGACCCTCTTCCTTCTCATGTTGCTAAGGGAACATTATAGGTTTGTAACTTGCCCCCTTAAATTGTTGCTCAGCCCTAAGAGGTGTTAGAAAAATGCTAGAATAAAACCACAACCATTACTGGCAGAGCATACCTTACTACCTTCTACTAGATGATATCCTTTCTCTCTCTCTCTTTGTAGTTTTACCACACAGGCAAACACAGGGGAAAAAAGTGGAAGGGCAGGATGATGGAGGGAAATATTTACTGAAGCAGAACATTAGAAGTTAGCTGATTAGAGTTAAAACTACAGAAAGTAAGCTAAGAAATCTAGGAAAGGAAATAAATTCATAGAGCCCACAGTGTAAAAGCAAATGACTTAGTTAACCAACCAAGAAAACTGGAAGGAACCTGAACCTCTGAAGTGGCATAGAAATGCTTTAGGAAGCAAGGACAAGCTGGTAATGAATTGAACAACATGTGGCAGCAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAAGAAAAAGAGATGTCTAAGCTAAAAAGAAAAAGTCTCCAAACTCTCAGTAACAGCTGATTGACTTTCTTGGGTGCACACTGTGATGGGGGAGCCTGTGTGTACAAAACAGAGCAGTAAAGTGCTCAATGAAAAGAGCCTCAGCACTGCATTTTTCCTCCCCCTAG
Seq C2 exon
GCTCACAGCTTTTGTACTGAAGACTTTCGCCCAGGCTCGATCCTACATCTTCATTGATGAAGCACACATTACCCAATCTCTCACGTGGCTCTCCCAGATGCAGAAGGACAATGGCTGTTTCAGGAGCTCTGGGTCACTGCTCAACAATGCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCAGAGACAGCTGAACT
R:
GCATTGTTGAGCAGTGACCCA
Band lengths:
238-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development