MmuINT0102587 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121829318-121830618:+
Coord C1 exon
chr6:121829318-121829405
Coord A exon
chr6:121829406-121830461
Coord C2 exon
chr6:121830462-121830618
Length
1056 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CACTCTCCCTCCCCCATCAGGCT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTTATCAGAGAGAGCTGAACTACAAACACAAGGATGGCTCCTACAGTGCCTTCGGGGATCAAAATGGCGAAAGAGAAGGAAACACTTG
Seq A exon
GTAAGAAGAGTCCACTGTGTGCCGGGCCTTGTTCAACTCTTGTTCCTCACAGCAGCTATACATGCATCTTATTTCATGGAAGTCTATGGGTGCCTGGGCCTGAGACGAACATCTCTGAGGTAGCTCAAACCATAATCTGCAGAACTAAGATTCCTTTGAGGCTCATCTGCTTTGACTCTGAACCATGTGCTTTCTTGATGTCAGTAAGCTGACTTTCTCATTTCTCTCCAGGATCATTCATCAGCAAATGCCTGGCTACATTTTGCTGAGCATCCAGAGATGCTCATAACTGAGACTCAAAAATCTCTTGCCATTTTTCATGTGACCTTGCATTATATGAGAATATATTACTGAGAGCTGGAGAGATGGTTCAGGTGCTAAGAGCACTGATTGTTGTTTCAGAGGTCCCAAGTTCAAATCCCAGCAACCACATAGTGACTCAACACCATCTAATGGGATCCGATGCACTATTCTGGTGTGTCTGAAGACAGCAACAGTGTCCTCATATACATAAAACAAATAAATACATCGTTCTGAAAAATTACACACTTACTTAAAAACCCAAAACAAAAACAGACAGATTTATTTAGATAAATCACACAAACAAATGACCAACAGGTGACAAAGAAAAAAAGAGACTGACATGAACCAGAGATAAACCAAGAAGAGTGCTCTAATTTTTTGAGACAGAAAACATATGGCTGGGGTTTTTAGGAAAGGAGATTATTCTGATATACAAAAGGAAATCATGAGAAAGGGGTGGGGAGAAGCCTATGATAAGCAGGTAGGTGTGTTAGACAAACACCAGAGGGTGAAAAATAGAAGAAATGAGAATGAAAAGCAGGAAACACCTGAAACCAAACCTAGTACATGCCCATCTGAGTGGACCATGGAATGGATGACTACTTTGGAGTAGCTAGAGAAGCTGTCCAGCTGTTCTTCTCAGAGACCCTTAGACTCATTGTCATGAGACTGGACTGGGCCCCTGGAAACCCATGTTTATAGGTACTGCCTCAGAACAAAGGATTCATCTCCCCACTCTCCCTCCCCCATCAG
Seq C2 exon
GCTCACAGCCTTTGTGCTCAAGTCTTTTGCCCAAGCTCGAGCCTTCATCTTCATCGATGAATCACACATCACCCATGCCTTCACCTGGCTCTCCCAAAAGCAGAAGGACAATGGCTGCTTCCGGAGCTCCGGATCATTGTTCAACAATGCCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAGAGCTGAACTACAAACAC
R:
TGTTGAACAATGATCCGGAGCT
Band lengths:
230-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: