HsaALTA1024720-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000131115 | ZNF227
Description
zinc finger protein 227 [Source:HGNC Symbol;Acc:HGNC:13020]
Coordinates
chr19:44228446-44229792:+
Coord C1 exon
chr19:44228446-44228572
Coord A exon
chr19:44229733-44229753
Coord C2 exon
chr19:44229754-44229792
Length
21 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
AAAAATCTACATTTTCATAGGGC
3' ss Score
5.13
Exon sequences
Seq C1 exon
GAGGCTGTGACATTCAAGGATGTGGCTGTGGTCTTCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGGAAGCTGTACCGAGATGTCATGGTGGAGAACTTCAAGAACCTGGTTGCAGTGG
Seq A exon
GGCATCTTCCCTTCCAACCAG
Seq C2 exon
ATATGGTATCCCAATTGGAAGCAGAAGAAAAGCTTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131115-11-20,11-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGACTGCTCGATCTTACC
R:
CCAAAGCTTTTCTTCTGCTTCCA
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains