HsaEX0073208 @ hg38
Exon Skipping
Gene
ENSG00000131115 | ZNF227
Description
zinc finger protein 227 [Source:HGNC Symbol;Acc:HGNC:13020]
Coordinates
chr19:44228446-44237268:+
Coord C1 exon
chr19:44228446-44228572
Coord A exon
chr19:44229733-44229816
Coord C2 exon
chr19:44234702-44237268
Length
84 bp
Sequences
Splice sites
3' ss Seq
AAAAATCTACATTTTCATAGGGC
3' ss Score
5.13
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GAGGCTGTGACATTCAAGGATGTGGCTGTGGTCTTCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGGAAGCTGTACCGAGATGTCATGGTGGAGAACTTCAAGAACCTGGTTGCAGTGG
Seq A exon
GGCATCTTCCCTTCCAACCAGATATGGTATCCCAATTGGAAGCAGAAGAAAAGCTTTGGATGATGGAAACAGAAACCCAAAGAA
Seq C2 exon
GCAGCAAGCATCAAAATAAGATGGAAACACTCCAAAAATTTGCATTAAAATACCTTTCAAATCAAGAGCTGTCCTGCTGGCAAATCTGGAAACAGGTTGCAAGTGAATTAACCAGGTGTCTTCAGGGGAAGAGTTCCCAGTTATTACAAGGTGACTCTATTCAGGTTTCTGAAAATGAGAACAATATAATGAACCCTAAAGGAGATAGCTCTATTTATATTGAAAATCAAGAGTTTCCATTTTGGAGAACCCAGCATTCTTGCGGGAATACATATCTGAGTGAGTCACAGATTCAGAGTAGAGGTAAGCAAATTGATGTGAAAAATAACCTGCAAATACATGAAGACTTCATGAAGAAATCACCATTTCATGAGCATATTAAAACTGACACAGAACCAAAACCCTGCAAAGGTAATGAATATGGCAAAATCATTAGTGATGGCTCCAATCAGAAATTACCCTTAGGAGAGAAACCCCATCCATGTGGTGAGTGTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131115_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.042 A=0.363 C2=0.154
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGACTGCTCGATCTTACC
R:
TTCCAGATTTGCCAGCAGGAC
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development