HsaEX0073208 @ hg19

Exon Skipping

Gene

ENSG00000131115 | ZNF227

Description

zinc finger protein 227 [Source:HGNC Symbol;Acc:13020]

Coordinates

chr19:44732640-44738988:+

Coord C1 exon

chr19:44732640-44732725

Coord A exon

chr19:44733886-44733969

Coord C2 exon

chr19:44738855-44738988

Length

84 bp

Sequences

Splice sites

3' ss Seq

AAAAATCTACATTTTCATAGGGC

3' ss Score

5.13

5' ss Seq

GAAGTAGGT

5' ss Score

6.22

Exon sequences

Seq C1 exon

GGAGGAACTGCGACTGCTCGATCTTACCCAGAGGAAGCTGTACCGAGATGTCATGGTGGAGAACTTCAAGAACCTGGTTGCAGTGG

Seq A exon

GGCATCTTCCCTTCCAACCAGATATGGTATCCCAATTGGAAGCAGAAGAAAAGCTTTGGATGATGGAAACAGAAACCCAAAGAA

Seq C2 exon

GCAGCAAGCATCAAAATAAGATGGAAACACTCCAAAAATTTGCATTAAAATACCTTTCAAATCAAGAGCTGTCCTGCTGGCAAATCTGGAAACAGGTTGCAAGTGAATTAACCAGGTGTCTTCAGGGGAAGAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000131115-'3-4,'3-3,4-4

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

Show structural model

Features

Disorder rate (Iupred):

C1=0.000 A=0.172 C2=0.150

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.0),PF0009621=zf-C2H2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7)

Main Inclusion Isoform:

ENSP00000321049