RnoEX6001636 @ rn6

Exon Skipping

Gene

ENSRNOG00000029022 | Zfp112

Description

zinc finger protein 112 [Source:RGD Symbol;Acc:1305757]

Coordinates

chr1:80953275-80958409:+

Coord C1 exon

chr1:80953275-80953398

Coord A exon

chr1:80954979-80955074

Coord C2 exon

chr1:80955948-80958409

Length

96 bp

Sequences

Splice sites

3' ss Seq

TGCTTTTCTTTTTTCACCAGCAC

3' ss Score

8.26

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

ATGGTGACCTTCAGGGATGTGGCCGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGATGCTGCCCAGAGGAAGCTGTACCGAGAGGTGATGCTGGAGAACTTCAGGACGCTGCTCTCAGTGG

Seq A exon

CACATCAGCCTTTCAAACCAGGTCTGATAGCCCAGCTGGAGAATGACGAGAAGCTTTGGATGGTGGCGGCAGACGCCCAAGCGGGTGGGCTCTCAG

Seq C2 exon

GAAGAAGGAGTGGACATACTGTGGAGAACGCTGAAGACACAGAGGAATTAAACTCCCTTTGTCCTGAGGAACTCTCCTGTCAGACCTGGCCATGGGGTCAAGAGTTTATAAAAAGATGCCAAGAGAGTACCAGTGAATCTTGGCGCCAAGGAGGGCCTCCCTGCCTGCTGTGGGCAGGAATGCCCGTTCAGATTTCCGAAGATGGGAATTACGTGTTGCCTCCTGTACATGAAGACTCTGCTTCCATAGAACATCCAGAGTTTCCTTCTCAGAGATGCCAGCAGTCATGGGAGGAGCCACATCTTGGCAGGCCCTGTAATTGCCTGTGGAAAGGTCAGCAAACATCATTAAGATATCACTTCTGTAGGTGTGACAGCATCGGCTGGTCCTCCTACCACAGTGATGAGGGGCTACATGGCAAAGGAAAAAGCTACCGTTTCCATGACCACAGAGGAGAGACTATGAAGGCATCATTACTTAATCAGGACTTGATTGAATTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000029022-'1-4,'1-3,3-4=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.196 C2=0.207

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=97.6)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0)

Main Inclusion Isoform:

ENSRNOP00000074981