BtaEX6082800 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000040209

Description

NA

Coordinates

chr18:52582739-52592461:-

Coord C1 exon

chr18:52592335-52592461

Coord A exon

chr18:52589765-52589851

Coord C2 exon

chr18:52582739-52585224

Length

87 bp

Sequences

Splice sites

3' ss Seq

TCTTCTCTCCTTTTTTACAGGAA

3' ss Score

12.24

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

GAGCCAGTGTCCTTCAAGGACGTGGCTGTGGTCTTCACCGAGGAGGAGCTGGGGCTGCTGGACTCGGCTCAGAGGAGGCTGTACCAGGAAGTGATGCTGGAGAACTTCCAGAACCTGCTCTCAGTGG

Seq A exon

GAAATCAGCCCTTCAAACCAGAGCTTATATTCCAGCTGGAGAGAGAAGAGCGTTTGATGATGGAGTCCCAGAGAGGTGGGTGTTCAG

Seq C2 exon

GAACCAAGAGTCCACATAATATGGAAAGTATTCAAGAAGTGGGATTAAGCTGCTTTTCCCCCAAAGACCTTTCCACCTGGCAGTCCTGGCAACGAGGTGCAGGCAGGTTAACTGGGTGTCAAGATTCCATGAGAAACTTCCAAGAGAATATTTCTCAGTTGCAAAAACAAGGTGATTCCCCCTGCCAGGTTTGGGCAGGAATACCAATTCAGATTTCTGAAGATGAGAACTGTGTCTTGACTCACATAGGAGACGGTTCCAATGACATAAAAAATCAAGAATTTCCCTCTTGGCGAGCCCACCATTCTTGGAGGAAAATGTACCTTACAGAGTCACGTAATTATCAATGTCGATGTCAGCAAGTTTCCAAGGAAAATGATTTCTGTAAATCTGACAGCATCAGTTGGATCTCACATCATGGTGATAATCTGGGTGTACACAGAACAGGAAAAAACTCCAGCTGCCATGACTGTGGAGAAGATGTCATGAAGGTTTCATTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000040209-'2-3,'2-2,5-3=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.300 C2=0.086

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0)

Main Inclusion Isoform:

ENSBTAP00000050759