HsaEX6095528 @ hg38
Exon Skipping
Gene
ENSG00000062370 | ZNF112
Description
zinc finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12892]
Coordinates
chr19:44326555-44340542:-
Coord C1 exon
chr19:44340416-44340542
Coord A exon
chr19:44336623-44336718
Coord C2 exon
chr19:44326555-44329936
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTTCCTTCTTTACAGCAC
3' ss Score
12.48
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGATGGTGACATTCAAGGATGTTGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGTCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTTAGTAG
Seq A exon
CACATCAGCCCTTCAAGCCAGACCTAATATCCCAGCTGGAGAGAGAAGAAAAGCTTTTGATGGTGGAGACAGAAACCCCAAGAGATGGATGTTCAG
Seq C2 exon
GAAGGAAGAATCAACAAAAGATGGAGAGTATTCAGGAAGTAACAGTAAGCTACTTTTCCCCCAAAGAGCTTTCCTCCCGTCAGACCTGGCAACAAAGTGCAGGTGGGTTAATCAGGTGTCAAGATTTCCTGAAAGTTTTTCAAGGGAAGAATTCTCAGTTGCAAGAACAAGGTAATTCCCTCGGCCAGGTTTGGGCAGGAATACCAGTTCAGATTTCTGAAGATAAGAACTATATATTCACTCATATAGGGAATGGCTCCAATTATATAAAAAGTCAAGGGTATCCATCTTGGAGGGCACATCATTCTTGGAGGAAAATGTATCTGAAAGAGTCACATAATTATCAGTGTAGATGTCAGCAAATTTCCATGAAAAATCATTTCTGTAAGTGTGACAGTGTCAGTTGGCTCTCACATCACAATGATAAACTGGAAGTACACAGAAAAGAAAACTACAGCTGCCATGACTGTGGAGAAGATATCATGAAGGTATCATTACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370-'6-17,'6-16,7-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.346 C2=0.098
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCACTGAGGAGGAGCT
R:
GACGGGAGGAAAGCTCTTTGG
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains