HsaALTA1026532-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000134545 | KLRC1
Description
killer cell lectin like receptor C1 [Source:HGNC Symbol;Acc:HGNC:6374]
Coordinates
chr12:10449237-10449967:-
Coord C1 exon
chr12:10449914-10449967
Coord A exon
NA
Coord C2 exon
chr12:10449237-10449339
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TGGATTACATATTCCAACAGTTG
3' ss Score
5.2
Exon sequences
Seq C1 exon
CTACATTAATACAGAGGCACAACAATTCTTCCCTGAATACAAGAACTCAGAAAG
Seq A exon
NA
Seq C2 exon
TTGTTACTACATTGGTAAGGAAAGAAGAACTTGGGAAGAGAGTTTGCTGGCCTGTACTTCGAAGAACTCCAGTCTGCTTTCTATAGATAATGAAGAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134545-5-9,5-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(28.1=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGCACAACAATTCTTCCC
R:
ATCTATAGAAAGCAGACTGGAGTTCT
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains