HsaEX0034918 @ hg38
Exon Skipping
Gene
ENSG00000134545 | KLRC1
Description
killer cell lectin like receptor C1 [Source:HGNC Symbol;Acc:HGNC:6374]
Coordinates
chr12:10449237-10450579:-
Coord C1 exon
chr12:10450484-10450579
Coord A exon
chr12:10449914-10449967
Coord C2 exon
chr12:10449237-10449388
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATTACTTTAATTTTTCTAGCTA
3' ss Score
5.58
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ATTTACCATCAGCTCCAGAGAAGCTCATTGTTGGGATCCTGGGAATTATCTGTCTTATCTTAATGGCCTCTGTGGTAACGATAGTTGTTATTCCCT
Seq A exon
CTACATTAATACAGAGGCACAACAATTCTTCCCTGAATACAAGAACTCAGAAAG
Seq C2 exon
CACGTCATTGTGGCCATTGTCCTGAGGAGTGGATTACATATTCCAACAGTTGTTACTACATTGGTAAGGAAAGAAGAACTTGGGAAGAGAGTTTGCTGGCCTGTACTTCGAAGAACTCCAGTCTGCTTTCTATAGATAATGAAGAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134545_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.316 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(28.1=52.9)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCTGTGGTAACGATAGT
R:
CGAAGTACAGGCCAGCAAACT
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development