HsaEX0034918 @ hg19
Exon Skipping
Gene
ENSG00000134545 | KLRC1
Description
killer cell lectin-like receptor subfamily C, member 1 [Source:HGNC Symbol;Acc:6374]
Coordinates
chr12:10601836-10603178:-
Coord C1 exon
chr12:10603083-10603178
Coord A exon
chr12:10602513-10602566
Coord C2 exon
chr12:10601836-10601987
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATTACTTTAATTTTTCTAGCTA
3' ss Score
5.58
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
ATTTACCATCAGCTCCAGAGAAGCTCATTGTTGGGATCCTGGGAATTATCTGTCTTATCTTAATGGCCTCTGTGGTAACGATAGTTGTTATTCCCT
Seq A exon
CTACATTAATACAGAGGCACAACAATTCTTCCCTGAATACAAGAACTCAGAAAG
Seq C2 exon
CACGTCATTGTGGCCATTGTCCTGAGGAGTGGATTACATATTCCAACAGTTGTTACTACATTGGTAAGGAAAGAAGAACTTGGGAAGAGAGTTTGCTGGCCTGTACTTCGAAGAACTCCAGTCTGCTTTCTATAGATAATGAAGAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134545-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.316 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(28.1=52.9)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCTGTGGTAACGATAGT
R:
CGAAGTACAGGCCAGCAAACT
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)