RnoEX6015320 @ rn6
Exon Skipping
Gene
ENSRNOG00000055196 | Klrc1
Description
killer cell lectin like receptor C1 [Source:RGD Symbol;Acc:2976]
Coordinates
chr4:163461962-163463211:-
Coord C1 exon
chr4:163463110-163463211
Coord A exon
chr4:163462548-163462598
Coord C2 exon
chr4:163461962-163462113
Length
51 bp
Sequences
Splice sites
3' ss Seq
AAAATATTTTAACTCTTCAGATA
3' ss Score
7.13
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GTTTTCCATCTCCTCCAGAAAAACTCATTGCTGGGACCCTGGGCTTCATCAGTTTTGTCTTAATTGTTGCTGTGGTTGTAATTACTACAGTTGCCACACCAT
Seq A exon
ATACTGAAACAAAGGCACAGATCAACTCCTCAATGACGAGAACCTACCAAG
Seq C2 exon
CACGACCTTGTACTCGTTGTCCAGATGATTGGATATCATATTCCCACAACTGTTATTACATTAGTGTGGAGAGAAAATCTTGGAATGATGGTTTGACGTCCTGCATTTCCAAAAATTGCAGTCTGCTTCACATAGATAGTGAAGAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055196-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(28.1=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACTACAGTTGCCACACCA
R:
GGAAATGCAGGACGTCAAACC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]