HsaALTA1026532-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000134545 | KLRC1
Description
killer cell lectin like receptor C1 [Source:HGNC Symbol;Acc:HGNC:6374]
Coordinates
chr12:10449237-10449967:-
Coord C1 exon
chr12:10449914-10449967
Coord A exon
chr12:10449340-10449388
Coord C2 exon
chr12:10449237-10449339
Length
49 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TAATTCATATCTTTATTTAGCAC
3' ss Score
5.41
Exon sequences
Seq C1 exon
CTACATTAATACAGAGGCACAACAATTCTTCCCTGAATACAAGAACTCAGAAAG
Seq A exon
CACGTCATTGTGGCCATTGTCCTGAGGAGTGGATTACATATTCCAACAG
Seq C2 exon
TTGTTACTACATTGGTAAGGAAAGAAGAACTTGGGAAGAGAGTTTGCTGGCCTGTACTTCGAAGAACTCCAGTCTGCTTTCTATAGATAATGAAGAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134545-5-9,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(28.1=52.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGCACAACAATTCTTCCC
R:
ATCTATAGAAAGCAGACTGGAGTTCT
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains