HsaALTA1026701-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000134779 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chr18:36786573-36798585:-
Coord C1 exon
chr18:36798449-36798585
Coord A exon
chr18:36786983-36787079
Coord C2 exon
chr18:36786573-36786982
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCTATTTCCATCTGCACCAGATA
3' ss Score
5.49
Exon sequences
Seq C1 exon
GGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAG
Seq A exon
ATAACTTATAATATCAAAATGAATAGAAGAAAATGTGTTCACTGGAAACTGGCTGTTGAGCCCCTCCAATGGGAGCTGAGGAGCTGTGTCTCTGCAG
Seq C2 exon
GCATGGGGACTGGCCACAAGCAAAGAGTCAGCAGCATGAAGCCCCGGAGCTGTAGCGTGTGCAGCAGGCGCCAATCCAACAGCATGGGAACAACAGTGTCGCAATCATTCCTCAGTTATGGCAAGAATGTGCTATTTTTCACTGTTAGGTGTTGCTTCTGAGAACTACAAATAAAACTCTCCAACCAAGTGAACAGACTCTCTGCTGGCCAAGGGGACTCCAGAGAACCTTAGAAACTGAGTTTCTGACCATAACAGGATGGGAGGTCAGACACACCTCATCATACCCCCTCCCTTTTGTGGTTTTAGACACAACAACTGATCAGCATTGATATTAAAAGAGAGATCATAAGACTGACGGAACAACTTTGTGACAATAAGATACCAAATAATAAACAGGATCTAAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779-24-32,24-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCCTATTACCGCCTGCT
R:
TTCCCATGCTGTTGGATTGGC
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains