HsaEX1041702 @ hg38
Exon Skipping
Gene
ENSG00000134779 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chr18:36777647-36798609:-
Coord C1 exon
chr18:36798449-36798609
Coord A exon
chr18:36781799-36781922
Coord C2 exon
chr18:36777647-36780188
Length
124 bp
Sequences
Splice sites
3' ss Seq
TATGTATTCTTTTCAATAAGGTG
3' ss Score
5.63
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
CATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAG
Seq A exon
GTGATTAAACACAACCGTCTATAATGTACAGACCCAACTCTCGCAAGTTCCAGGCTCTCCTGGGGTGTTCACATCCATCATGTACTATTTGACAAATGTCTGCTTCAACAAGCTCCCTGTCTCC
Seq C2 exon
CCCAAAGGATCTGAAGGCCGTTCCAAGCGAGGGTGCTTCTGAGGACACTGAGAAGAGTTTTGCCATTCTGAAGAGGCGAGCCTGTGGAACTGTTTAAGGTCCTGTTCCCAGAAGAATAAAAGTTTCTCATTATGGCATTAAACTCTATTTATTTAGTATTTGAAACATGGTGTACATGTATGTATTTGTATAAACATTTGTTACATCTAAAATCCACAACAGGTAAACAATCTGTGCTTTCTTTTGTGTACAAGTTTGGGGTTTACATCTGGATATTTTGGTGTTGTGGAGACTCAGTCTGTGAAGCTAATCAGATTGCCTCATATTACCATAATAACTGTGACAGAAGTGATTTGCTCCTTAAAGGGGCTGTTCCTTGCCCAGAAAAGGTGTCACACTTTTGAACTAATAAACCGGGTGTCACGGAATCAAGAGAAACACAGCTGACACGATGGAGAAGGTATGTGCAGGGGACTCCTGGAGATCCAAGTCAATGCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779_MULTIEX1-6/6=4-C2
Average complexity
S
Mappability confidence:
86%=86=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGATCTGGTTCCTGGACA
R:
TAAACAGTTCCACAGGCTCGC
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains