HsaEX1041701 @ hg38
Exon Skipping
Gene
ENSG00000134779 | TPGS2
Description
tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24561]
Coordinates
chr18:36777647-36798609:-
Coord C1 exon
chr18:36798449-36798609
Coord A exon
chr18:36796809-36797050
Coord C2 exon
chr18:36777647-36780188
Length
242 bp
Sequences
Splice sites
3' ss Seq
CTTCCAATTCTGCCTTACAGCAA
3' ss Score
8.91
5' ss Seq
GAAGTGAGC
5' ss Score
5.01
Exon sequences
Seq C1 exon
CATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAG
Seq A exon
CAATGGTTCAGCATGTATAAACCTATCACCTACAACACAAACCTGCTCACAGAAGAGACCGACTCCTTTGTGAATAAGCTAGATCCCAGCAAAGTGTTTAAGAGCAAGAACAAGATCGTAATCCCAAAAAAGAAAGGGCCTGTGCAGCCTGCAGGTGGCCAGAAAGGGCCCTCAGGACCCTCCGGTCCCTCCACTTCCTCCACTTCTAAATCCTCCTCTGGCTCTGGAAACCCCACCCGGAA
Seq C2 exon
CCCAAAGGATCTGAAGGCCGTTCCAAGCGAGGGTGCTTCTGAGGACACTGAGAAGAGTTTTGCCATTCTGAAGAGGCGAGCCTGTGGAACTGTTTAAGGTCCTGTTCCCAGAAGAATAAAAGTTTCTCATTATGGCATTAAACTCTATTTATTTAGTATTTGAAACATGGTGTACATGTATGTATTTGTATAAACATTTGTTACATCTAAAATCCACAACAGGTAAACAATCTGTGCTTTCTTTTGTGTACAAGTTTGGGGTTTACATCTGGATATTTTGGTGTTGTGGAGACTCAGTCTGTGAAGCTAATCAGATTGCCTCATATTACCATAATAACTGTGACAGAAGTGATTTGCTCCTTAAAGGGGCTGTTCCTTGCCCAGAAAAGGTGTCACACTTTTGAACTAATAAACCGGGTGTCACGGAATCAAGAGAAACACAGCTGACACGATGGAGAAGGTATGTGCAGGGGACTCCTGGAGATCCAAGTCAATGCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134779_MULTIEX1-5/6=4-C2
Average complexity
S
Mappability confidence:
83%=83=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.433 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATATGCCTTCACCAGCTA
R:
ACCCCAAACTTGTACACAAAAGA
Band lengths:
305-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains