HsaALTA1027101-3/6 @ hg38
Alternative 3'ss
Gene
ENSG00000135390 | ATP5G2
Description
ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:HGNC:842]
Coordinates
chr12:53669871-53672645:-
Coord C1 exon
chr12:53672576-53672645
Coord A exon
chr12:53669941-53669948
Coord C2 exon
chr12:53669871-53669940
Length
8 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTGTATGTCATTCCTGCTAGGTC
3' ss Score
9.8
Exon sequences
Seq C1 exon
CTCTCCTGCCACAGCTCCTCACCCCCTGAAAATGTTCGCCTGCTCCAAGTTTGTCTCCACTCCCTCCTTG
Seq A exon
GTCAAGAG
Seq C2 exon
CACCTCACAGCTGCTGAGCCGTCCGCTATCTGCAGTGGTGCTGAAACGACCGGAGATACTGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135390-15-35,15-34,15-33,15-32,15-31,15-30-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCACCCCCTGAAAATG
R:
TTCAGCACCACTGCAGATAGC
Band lengths:
102-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains