MmuALTA0002326-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000062683 | Atp5g2
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) [Source:MGI Symbol;Acc:MGI:1915192]
Coordinates
chr15:102665801-102671127:-
Coord C1 exon
chr15:102671018-102671127
Coord A exon
chr15:102665851-102665855
Coord C2 exon
chr15:102665801-102665850
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGCCCTTGTCATTCCACTAGATC
3' ss Score
8.78
Exon sequences
Seq C1 exon
CTCTATCCATGGAGAAAAGCGACTCGTTGGCTCCGGCCGCGCATGCGCAGAGCCTTCCCTCGCGCTTCCCGCGCCCCCGCCCCTCTCTGTCTTCTCTGCCCTGGGAGCAG
Seq A exon
ATCAG
Seq C2 exon
GAGCACCTCTCTCAGGAGCACCTCTCAGCTGCTGAGTCGTCCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062683-3-8,3-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTTCCCTCGCGCTT
R:
CAGCTGAGAGGTGCTCCTGAG
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types