RnoALTA0005176-2/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015320 | Atp5mc2
Description
ATP synthase membrane subunit c locus 2 [Source:RGD Symbol;Acc:620051]
Coordinates
chr7:144267176-144269486:-
Coord C1 exon
chr7:144269421-144269486
Coord A exon
chr7:144267249-144267253
Coord C2 exon
chr7:144267176-144267248
Length
5 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTCCTTGTCATTCCTCTAGATC
3' ss Score
10.95
Exon sequences
Seq C1 exon
TCTGCCTTTGCCCCTCACCCCTGAAAAATGTATGCCTGCTCCAAGTTCGTCTCTACCCGCTCCCTG
Seq A exon
ATCAG
Seq C2 exon
GAGCACCTCTCAGCTGCTGAGCCGTCCGCTCTCTGCAGTGGAGTTAAAGCGACCACAGATGCCCACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015320-14-11,14-10,14-9,14-8,14-7,14-6,14-5-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGCCTGCTCCAAGTTCGT
R:
CATCTGTGGGCATCTGTGGTC
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]