HsaALTA1027194-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000135486 | HNRNPA1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
Coordinates
chr12:54280193-54281941:+
Coord C1 exon
chr12:54280193-54280822
Coord A exon
chr12:54281795-54281860
Coord C2 exon
chr12:54281861-54281941
Length
66 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TAAATTAACACTGTTCTCAGGTA
3' ss Score
5.13
Exon sequences
Seq C1 exon
ACACGTGCGGTCAACAAGAGTTCATTGCAAAAAAATTGTTACCTCCTGGCTGCTTGTCTAATACATAGTGTTAATCATGCTTTGCCAAGCGACTTGACTGTAATATTTGCGCGTGGAAGATTAAAAAGATGTTAAACACCCAAGGTAGATTCAAATGTGAATGATTGGTCGGTTGGCCAATCAGACTGGTTAACAATAACATTACTCGGGAACCAATGGACTCCAAGGGGTGGAGACGGCGTAGAACGACCGAAGGAATGACGTTACACAGCAATGTGGCACCACAGGCCAATAGCAGGGGGAAGCGATTTCAAGTATCCAATCAGAGCTGTTCCAGGGCGGAGTCTACCAATGCCGAAAGCGAGGAGGCGGGGTAAAAAAGAGAGGGCGAAGGTAGGCTGGCAGATACGTTCGTCAGCTTGCTCCTTTCTGCCCGTGGACGCCGCCGAAGAAGCATCGTTAAAGTCTCTCTTCACCCTGCCGTCATGTCTAAGTCAGAG
Seq A exon
GTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAG
Seq C2 exon
GAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135486-0-7,0-6,0-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PD(57.1=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGCTGGCAGATACGTTCG
R:
GGAGACAGCTCTCTTTGGTTCC
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains