HsaALTA1027202-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000135486 | HNRNPA1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
Coordinates
chr12:54281386-54282138:+
Coord C1 exon
chr12:54281386-54281502
Coord A exon
chr12:54282090-54282105
Coord C2 exon
chr12:54282106-54282138
Length
16 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TATGGTTTTTCTCCTATTAGGAT
3' ss Score
9.67
Exon sequences
Seq C1 exon
TCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTG
Seq A exon
GATTCTCAAAGACCAG
Seq C2 exon
GTGCCCACTTAACTGTGAAAAAGATATTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135486-4-9,4-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(40.0=71.8)
A:
NA
C2:
PF0007617=RRM_1=PD(3.2=1.4),PF0007617=RRM_1=PU(81.4=80.3),PF072928=NID=PU(33.3=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCTCTTCATTGGAGGGT
R:
TCTTTTTCACAGTTAAGTGGGCAC
Band lengths:
117-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains