HsaALTA1027577-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103684989-103688215:+
Coord C1 exon
chr12:103684989-103685084
Coord A exon
chr12:103688168-103688192
Coord C2 exon
chr12:103688193-103688215
Length
25 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CCTTGCATGATATGAATAAGGAA
3' ss Score
-0.56
Exon sequences
Seq C1 exon
GCAAGCTGTCAATCTACTTCGTCTGGTGTCTGGAGCTGTGTTTGTCAAGAGGGCTATGAAGGAGATGGCTTTCTGTGCTATGGAAACGCAGCAGTG
Seq A exon
GAATTGTCATTTCTCTCCGAAGCAG
Seq C2 exon
CTATATTTAACCGATGGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-30-41,30-40,30-39-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(67.6=78.1)
A:
NA
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains