MmuALTA0017407-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86924397-86926692:-
Coord C1 exon
chr10:86926597-86926692
Coord A exon
chr10:86924420-86924444
Coord C2 exon
chr10:86924397-86924419
Length
25 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTTGGAACAAATGAATAAGGAA
3' ss Score
-3.47
Exon sequences
Seq C1 exon
GCCACCTGTCAATATACTTTGTCTGGTGTTTGGAGCTGTGTTTGCCAAGAGGGCTATGAAGGAAATGGTGTCCTGTGCTATGGAAATGTGCTCATG
Seq A exon
GAACTGTCGTTTCTCTCTGAAGCAG
Seq C2 exon
CTGTATTTTACCAGTGGATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-28-39,28-38,28-37-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(67.6=78.1)
A:
NA
C2:
PF0246917=Fasciclin=PU(8.0=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types