HsaALTA1028272-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136950 | ARPC5L
Description
actin related protein 2/3 complex subunit 5 like [Source:HGNC Symbol;Acc:HGNC:23366]
Coordinates
chr9:124868428-124873764:+
Coord C1 exon
chr9:124868428-124869439
Coord A exon
NA
Coord C2 exon
chr9:124873694-124873764
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TAACTGGTGGTGATGCACAGGGG
3' ss Score
1.38
Exon sequences
Seq C1 exon
GGAACCAGCGCAGTTACGGCACACACGAGGCGGGGCCTGCACAGATGCCGGGCGCCCGATCCTCAGTGACAAAATAGAGACTCCGTGGAAGGGACACTGAGGTGGGGGAGGCTGCGGTGATCCCATACCGCACTCCAGGTGCCAGGCTCCGCCCCGCCCCTGACGGCGCTTCCGGATCCGGCGGGTGCCGGAAGTGGGCGGGCGGCGGCGGCTGCGCGCGGAGGCGGTGGAGGAGGTGCTGGGAGCAGCCGGGCAGCCGCTTCCCGCCCCCGAGCAGGAGCCGGTGCGAGCGGAGCAGAGCCGAGGTCGGGCCGCGAGCGGAGCCGGCTGAGCGGGCGCCGAGCTCCCGCCATGGCCCGGAACACGCTGTCCTCGCGCTTCCGCCGGGTGGACATCGACGAATTTGACGAGAACAAATTTGTGGACGAGCAGGAGGAGGCGGCGGCGGCGGCGGCGGAGCCAGGCCCGGACCCGAGCGAGGTGGACGGGCTCCTGCGGCA
Seq A exon
NA
Seq C2 exon
GGGACATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCCGTCAACACCAAGAATCAAGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136950-5-18,5-17,5-16-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=NA C2=0.240
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(28.8=84.0),PF093845=UTP15_C=PU(26.1=62.0)
A:
NA
C2:
PF046999=P16-Arc=FE(16.4=100),PF093845=UTP15_C=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCGAGCGAGGTGGAC
R:
TGATTCTTGGTGTTGACGGGA
Band lengths:
93-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains