BtaALTA0003485-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015278 | ARPC5L
Description
Bos taurus actin related protein 2/3 complex, subunit 5-like (ARPC5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001034737]
Coordinates
chr11:95859894-95864255:+
Coord C1 exon
chr11:95859894-95860120
Coord A exon
NA
Coord C2 exon
chr11:95864185-95864255
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TAACCGCTGCTGGTGCACAGGGG
3' ss Score
3.97
Exon sequences
Seq C1 exon
CCGGAGCCGGTTTTGAGCGGAGTAGAGTGGAGGTCTGCTCCGGAGCATAGCCGGTTCAGCGGGCGCTGAGTCCCCGCCATGGCCCGGAACACGCTGTCCTCGCGCTTCCGTCGGGTGGACATCGATGAATTTGATGAGAACAAATTCGTGGACGAGCAGGAGGAGGCGGCGGCGGCGGCGGGCGAGCCAGGCCCGGACCCTAGCGAGGTGGACGGGCTCCTGCGGCA
Seq A exon
NA
Seq C2 exon
GGGACATGCTCCGGGCATTTCACGCAGCCTTGCGGAACTCTCCTGTCAACACCAAGAACCAAGCCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015278-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=NA C2=0.240
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(28.8=84.0),PF093845=UTP15_C=PU(25.4=60.0)
A:
NA
C2:
PF046999=P16-Arc=FE(16.4=100),PF093845=UTP15_C=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCTAGCGAGGTGGAC
R:
CTTCACGGCTTGGTTCTTGGT
Band lengths:
104-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development