DreALTA0005309-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000041720 | arpc5la
Description
actin related protein 2/3 complex, subunit 5-like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1453]
Coordinates
chr8:41446058-41449891:+
Coord C1 exon
chr8:41446058-41446444
Coord A exon
NA
Coord C2 exon
chr8:41449821-41449891
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TAACTAACTGTGATGCACAGGGG
3' ss Score
2.37
Exon sequences
Seq C1 exon
ACTATGCTGTGTAATTCCGCTTCCGCCCCAGTCGGGATTTTCGTCCGCTCTGCAGGAATGTGTGGTGGAGATGCTCGGGCCGGTGGAGAAGGAACAGCCGCACCTTCCTGCTGACAGATGAACCTTCGACCGGCGGCGGCCCGTGCCTGAGGGAAGCGGACACACGCGCGCACCCCACCCGTCCCGCCACCGCGCTTTCCCGGACTCCCCCAACCGATAGATCGACTGATTAAAGCGGCTCCTCCTCATGGCGAAAAACACCCTGTCCTCACGGTTCCGGGGAGTCGATATCGACGAGTACGACGAGAATAAATTCGTGGACGACCAAGACGAGGCGGCCGAGCAGCAGGGACCGGACGCGTGTGAGGTGGACGATCTCATCAGGCA
Seq A exon
NA
Seq C2 exon
GGGACATGATGACAGCATTTCACATCGCCTTGAGGAATCCACCAATCAACTCCAAGAATCCAGCAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041720-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(27.3=83.0),PF063236=Phage_antiter_Q=PU(17.3=40.4)
A:
NA
C2:
PF036668=NPR3=FE(26.1=100),PF046999=P16-Arc=FE(16.1=100),PF063236=Phage_antiter_Q=FE(20.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGAGGTGGACGATCTCA
R:
TCACTGCTGGATTCTTGGAGT
Band lengths:
97-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]