MmuALTA1045988-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026755 | Arpc5l
Description
actin related protein 2/3 complex, subunit 5-like [Source:MGI Symbol;Acc:MGI:1921442]
Coordinates
chr2:39008076-39013187:+
Coord C1 exon
chr2:39008076-39008344
Coord A exon
NA
Coord C2 exon
chr2:39013117-39013187
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TAACTGGCTTTGATGCACAGGGG
3' ss Score
3.6
Exon sequences
Seq C1 exon
GCGCGCGGAGGAGGGGAGGCGGTGCCTGGCGGCCGCTTCCCGCCCCCAAGCGGAGCCGGTGCGGAGGGGAGCCGGGAAAGAGCGAAGCCTAGGCGGCTGAGTGGCCGCCGCGCTCCCGCCATGGCCCGGAACACACTGTCCTCACGCTTCCGCCGCGTGGATATCGACGAATTTGACGAGAACAAATTCGTAGACGAGCACGAAGAGGCAGCGGCGGCGGCGGGCGAGCCAGGCCCCGACCCCTGCGAGGTAGACGGGCTCCTGCGGCA
Seq A exon
NA
Seq C2 exon
GGGACATGCTTCGGGCGTTCCATGCAGCTTTGCGGAACTCACCAATCAACACCAAGAATCAAGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026755-2-16,2-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=NA C2=0.431
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(28.8=84.0)
A:
NA
C2:
PF046999=P16-Arc=PD(17.8=34.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAGACGAGCACGAAGAGG
R:
ATGGAACGCCCGAAGCATG
Band lengths:
105-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types