HsaALTA1030180-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000139722 | VPS37B
Description
VPS37B, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr12:122868480-122871061:-
Coord C1 exon
chr12:122870890-122871061
Coord A exon
chr12:122868559-122868562
Coord C2 exon
chr12:122868480-122868558
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACT
5' ss Score
6.43
3' ss Seq
ACCTCTTGCTTTTTTTCCAGACA
3' ss Score
9.96
Exon sequences
Seq C1 exon
ACACAGAATGTTCAGCTTAACAAAGAAATGACACTTGCCAGCAACCGGAGCCTGGCAGAAGGAAACCTTTTGTACCAGCCCCAGCTGGACACGTTGAAAGCACGCTTGACCCAGAAATACCAGGAACTCCAGGTTCTCTTTGAAGCCTATCAGATAAAGAAGACCAAATTAG
Seq A exon
ACAG
Seq C2 exon
ACAGTCTAGCAGTGCTTCCTTGGAGACCCTGTTAGCACTTCTTCAGGCAGAAGGGGCCAAGATTGAGGAAGACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139722-10-15,10-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(38.0=100)
A:
NA
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACGCTTGACCCAGAAAT
R:
AACAGGGTCTCCAAGGAAGCA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains