HsaINT0180816 @ hg38
Intron Retention
Gene
ENSG00000139722 | VPS37B
Description
VPS37B, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr12:122868480-122871061:-
Coord C1 exon
chr12:122870890-122871061
Coord A exon
chr12:122868563-122870889
Coord C2 exon
chr12:122868480-122868562
Length
2327 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACT
5' ss Score
6.43
3' ss Seq
ACCTCTTGCTTTTTTTCCAGACA
3' ss Score
9.96
Exon sequences
Seq C1 exon
ACACAGAATGTTCAGCTTAACAAAGAAATGACACTTGCCAGCAACCGGAGCCTGGCAGAAGGAAACCTTTTGTACCAGCCCCAGCTGGACACGTTGAAAGCACGCTTGACCCAGAAATACCAGGAACTCCAGGTTCTCTTTGAAGCCTATCAGATAAAGAAGACCAAATTAG
Seq A exon
GTAACTTTTTAAGGGTGATCATTCGAGAATAAAGAGTTGAGAGAAGGACACATTTTCAAGCTATTGCCCTACCAGGAAAGAAATATTACGGAAAAATTTCAGGTTAAGATAGCGACTCTACTGCAATGAACAAATAGCTTATGTATATTATTTATTTATTTTTAGAGACAGGGTCTTGCTCTGTCAGACTGGAGTGCAGTGGCGCAACCATGGCTCAGCACGACCTCCTGGGCTCAGGTGATCCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACCACAGGTGTGCACTACCCCAAGCAGGCTAGTTTTTCATTTTTTTGCAGAGAGGTTGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCAAGCCATCCTCCTGCCTTTGCCTCACAAAGTGCTGCTATTACAGACATGAGCCACTGTATTGGACTAGTTTATGTATGGAATATGGAGGGCCCCCAGACCTGCGGCCTCTCTGCACTTGCGGTTCGAGAGGGCAGGGTGTATAGCAGGACTGCCCCCTCCTCCCAGTGGCCCTGACTGGTGGCGGTGACTGCTGAGGTCAGCCCAGGTCCACACGCACCTCCAGGGTCTGCAGTGTGAAGCAGGTTGCAGAAACGTGGGTACCTCGGGGCAGTTACCAGAAAAGGGGCTGGAGATTAGGAGGAAGCCAGCCAGTTTAGCAGTCACCAGTTTAGAAGAGGAGACTTAACCACTTTTTAAATTCAAGACCCCACCTTCTCTAAACAGCATAGAAAAAGCTTTCTGAATTATGATATTAAACAGATGTCTTATGACGTTTGCCCGTTTGTCTTATGCTGTTTGTTAATGGTAAAAAAAAAAAAAAAAAAAGCATCACTGAAACACTTTATTTTAATGGCATACTTTAATTTGCAGCCATTAGGAGGAGACATCAGAATTAAAGATTGTTGAGCATCCTAAGTGCTTTTGATAGTTATCAAAGGGACATTTAGATAAAGTCAGAGCTGGGGGTGGTGGCACACGCCTATGGTCCTAGCTACTTGGGAGGCTAAGGAAGGAGGATTGCTTGAGCCTTGGAGATTGAAGCTGCAGTGAGCCATGATTGCAGCCCTGTACTCCAGCCTGGGCGACAGAGCGAGACTGTGTCTCTACAAAAGAAGTGAAATAAGCTGGGGGTGGTGGTGCTCGCCTATAGTCCCACCTACTCTGAAGGCTGAGGCCACAGTGAACTGTGATTGCATTACTGTACTCCACCCTGGGTGACAGAGACCCCATCCCTTTAAAGAGTTTGGGTTAAAGATCACCTTCTGCAGTGAGGTTTACAGTGATGTCTGTCACTACTTGCTATCATCTTGTCATTTTCTCCATTAACTTCAGTAAAAATTTACGATCATACACCCAAACCAGAATGACGAAAAGTAAAAAGACTGGCAGTACCAAGTGCTGTGAGGTGCCGTGCATCTTGCTGGTAGGAGTGTCCATGGGTCATCTGGGGCTTGCAGGCTGCACTGCCACAGCCACCTCCTTTTCTCATTTCACCTGGGGAAGGCTGTTGGGTAGCACCTGCTAGAATGAAGAGTGTGTATGCGCTGCACAGCAGCTCTGCTCCTGGGTGTATACCCAACAGAAGTGGATATTAATGTCTCTCAGAAGATAGGTACAAGAATGTTGTATCTTTATTACCTTATAATAAAATTTGGAAACAATAAAAATGTCCGTCTACAGAGTGATGGGCACATAAAGTCTGTTTACACAATGGAACACTACACAGCATTGGAAAGAAACGAACTGATTCACAGACCTGAGCAGGGTCTCAGAGACGCGGTGCTGAGTGCAAGAAGCCAGGAGAGTATGACCTGTACTCTCTGATTCCAGGATGTGGAGTCAAGACCAGGCGGACCTCCTCTGTGGTGGTGGAGGCCAGCGTAGGGGTTATCTGGCGGGTGCAGTGGGCGTGAGGGCGCCCGGTGGAAAGGTTCTGTGTCTGGATCTGGGGGGTGGTGGTTGGCGGTTAAACACGTGGAAATTTGACTTACACACTTGAGATGTGTATACTCGATGTAAGTTACCACTCAAAACATAAAGGAAATACAAAGTGGCATGATGAGAATGTCACTGCCCCATATTTGAAAACAGCTGGTTCTAGAAGCAGCTGGTGACACAGGTTGCTCTGACATGGGATGTTGGCCCCTGGGCACTGGCTTGGTGCACTTGTTCCCCTGTAGGTTTTCAAGCCTTTCACATTCAGCTTCCTGGAAAGGAAGGTGCAATCCTGCCGTGGTTGGCATCATGAAGGGCTTTACCTGGACACCTCTCACTTTTGTCATACCTCTTGCTTTTTTTCCAG
Seq C2 exon
ACAGACAGTCTAGCAGTGCTTCCTTGGAGACCCTGTTAGCACTTCTTCAGGCAGAAGGGGCCAAGATTGAGGAAGACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139722:ENST00000267202:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(38.0=100)
A:
NA
C2:
PF072008=Mod_r=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains