HsaEX0070590 @ hg38
Exon Skipping
Gene
ENSG00000139722 | VPS37B
Description
VPS37B, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr12:122868480-122896444:-
Coord C1 exon
chr12:122895952-122896444
Coord A exon
chr12:122870890-122871061
Coord C2 exon
chr12:122868480-122868562
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTGTGTTCCTTGCAGACA
3' ss Score
10.67
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGGCTCACAGGCTGCGGGAACTTCCTTCCCACTGCCTGTTTTCCTTGGATCGCGGTATCTCTCTTCCTGGAGGAAAAAGGCTCTTATGACCTCATGGCGCGCTCTCCCGAGCCGCAGTGACGTCATTAATGCGCTCACGCGTCACAGCCCAATCATAGGGCCCTTCCCCTCCCTTTAGAAGTCCCGACTGTCCCTGACACATTCCACTCCAAGCGAGCCGCGACACTTACGTCACGTCCGCCCGCCCGCGCGGTGATGACGTCACGACCCAGGGCTGGCGTCACGTGTCCCCCCCGCGGGGGGCGGCCCTTGAGGGCGGCGCTTCCGGTCGGCGGAGCCTGGTGGCCGCAGCGGCGGTGGCGACGACGGCCGAGACGTGGGGATGGCGGGCGCCGGGAGCGAAGCCCGGTTCGCCGGGCTGTCGCTGGTGCAGCTCAACGAGCTGCTGGAGGACGAGGGCCAGCTGACGGAGATGGTGCAGAAGATGGAGGAG
Seq A exon
ACACAGAATGTTCAGCTTAACAAAGAAATGACACTTGCCAGCAACCGGAGCCTGGCAGAAGGAAACCTTTTGTACCAGCCCCAGCTGGACACGTTGAAAGCACGCTTGACCCAGAAATACCAGGAACTCCAGGTTCTCTTTGAAGCCTATCAGATAAAGAAGACCAAATTAG
Seq C2 exon
ACAGACAGTCTAGCAGTGCTTCCTTGGAGACCCTGTTAGCACTTCTTCAGGCAGAAGGGGCCAAGATTGAGGAAGACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139722-'0-14,'0-9,10-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.108 C2=0.119
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=73.0)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
ENST00000267202fB7733
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTCACGACCCAGGG
R:
AAGCACTGCTAGACTGTCTGT
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development