MmuEX1027742 @ mm10
Exon Skipping
Gene
ENSMUSG00000066278 | Vps37b
Description
vacuolar protein sorting 37B [Source:MGI Symbol;Acc:MGI:1916724]
Coordinates
chr5:124007609-124032270:-
Coord C1 exon
chr5:124032102-124032270
Coord A exon
chr5:124010688-124010859
Coord C2 exon
chr5:124007609-124007691
Length
172 bp
Sequences
Splice sites
3' ss Seq
AGCCCGTGTGTTTCTTGCAGGCG
3' ss Score
9.71
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GGTCGGCGGAGCTTGGCGGCCCGAGTGGCGGCGGCGGCGGCAGCGTCCGAGTGGCGGGATGGCGGGCGCCGTGAGCGAGGCGCGCTTCGCGGGGCTGTCGCTGATGCAGCTGCACGAGCTGCTGGAGGACGATGCACAGCTCGGCGACATGGTGCGGGGTATGGAAGAG
Seq A exon
GCGCAGACGGTTCAGCTTAACAAAGAGATGACCCTGGCTAGCAACCGGAGCCTGGCAGAGGGAAACCTTCTGTACCAGCCCCAACTGGATGCTCAGAAAGCTCGCCTGACCCAAAAATACCAGGAACTCCAGGTTCTCTTTGAGGCCTATCAGATAAAGAAGACCAAACTAG
Seq C2 exon
ATAAACAGTCTAACAACGCTTCCTTGGAGACTCTGTTAGCGCTTCTTCAAGCGGAAGGGGCAAAGATTGAGGAGGACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066278_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.026 C2=0.179
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=73.0)
A:
PF072008=Mod_r=FE(38.0=100),PF101464=zf-C4H2=PU(14.7=55.2)
C2:
PF072008=Mod_r=FE(18.0=100),PF101464=zf-C4H2=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGTCGCTGATGCA
R:
CTCAGTGTCCTCCTCAATCTTTGC
Band lengths:
162-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types